Spirodela Genome Sequence

  • Genome sequence
  • After download, please do "tar -zxvf genome.tar.gz"
  • Genome annotation
  • After download, please do "tar -zxvf annotation.tar.gz"
  • Blast Search
  • 20 chromosome-aligned sequences
  • For the genome sequence, you just need to extract the files by using 7zip software (www.7-zip.org). The fasta file is the 20 chromosome-aligned sequences and a pseudomolecule 0 containing all unsorted and short sequences. The gff contains the annotation information of the corresponding fasta file. It was prepared by Dr. Cao at cao@ipk-gatersleben.de.
  • Reference: The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution
    by Cao, Hieu; Vu, Giang; Wang, Wenqin; Appenroth, Klaus; Messing, Joachim; Schubert, Ingo. New Phytologist, 2015.